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The primary problem is names and naming is one of the critical challenges of the digital age.

The primary problem is names and naming is one of the critical challenges of the digital age.

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Ugh, Serpent! No, no!

Oslo african grey parrot talking

Mr Python sells musical animals such as parrots and mouse organs. He has a of suppliers who send animals and occasionally collections of animals which are labelled.

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Mr Python is not an ornithologist, but he has bought a molecular biology ;arrot and can sequence the DNA of the things he is sent. He labels this C1 S5 So far there is no problem.

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He labels this as C1 S6. Mr python starts to regard these names as synonyms.

But now the confusion starts: he gets a picture of a parrot. Since he is not an art gallery he does not accept this into the collection. He puts this into falking collection as S7. It is, in fact, a stuffed parrot.

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He does not offer grsy to his customers. He is deliberately impartial to what name belongs to what DNA. He does care about selling dead birds and does not offer them in his catalog. But for all the rest he simply shows what names have been associated with what DNA. Steve and his colleagues check the any sample offered to see if it has a connection table CT.

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If this CT is already in Pubchem, they use its. If not they create a new entry for the new connection table.

The information provided by the supplier goes in exactly as it is sent. This lead to name-structure links which appear absurd to most of us.

But we should remember that there have been some very strange names in the past. So Pubchem records this accurately. The real problems is with chemical suppliers.

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The level of accuracy and checking is often extremely poor. Formally the only way to resolve a naming problem is to convene a committee of the great and the good in the domain, have them debate endlessly and finally come out with a recommendation. It took many years to agree on the name of element even though none of it exists in chula vista men models because of US-Soviet politics.

Often the names are never used in practice. But how many of you use that!

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So this is a feature of the search algorithm — name searching is a hard problem — and as Pubchem continues afgican develop software will reduce. The fundamental problem is that chemoinformatics and chemical information is fundamentally broken and the main purveyors do not care. The semantics are necessarily inconsistent.

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So Pubchem faithfully reflects the broken nature of chemical infomation. It cannot mend it — there are only ca. But could social computing change it? I think chemistry is different.

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And I think we could do it almost effortlessly — rather like the Internet Movie Database. Here every participant can vote for popularity or tomatos. This entry was posted in Uncategorized. Bookmark the permalink.

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